Welcome to the riboCIRC database

Translation of circular RNAs (circRNAs) now has drawn increasing attention from researchers due to their emerging roles of the functional peptides encoded by circRNAs as new players involved in the regulation of gene expression. However, the scope of circRNA translation is not yet clear. To this end, we analyzed 3,184 publicly available Ribo-seq datasets and 1,986 matched RNA-seq datasets from the same samples involving 321 studies covering 33 species to determine the prevalence of circRNA translation, and meanwhile designed a dedicated database named riboCIRC, which aims to provide: (1) a comprehensive atlas of computationally predicted translatable circRNAs, (2) a manually curated collection of experimentally verified translatable circRNAs, (3) a systematic de novo sequence, structural, and functional annotation of circRNA-encoded peptides, and (4) a context-specific ribosome footprint view of translatable circRNAs. This database will serve as an important novel resource for bench and computational biologists to explore translated circRNAs and to drive functional investigation of circRNA translation.


Currently the database contains a total of 0 computationally predicted translatable circRNAs across 0 different species (Human, Mouse, Rat, C.elegans, Drosophila and Zebrafish) and 0 experimentally verified translatable circRNAs.






News

  • 15th Jun 2020

    riboCIRC is officially released as a final version.

  • 20th May 2020

    Manual literature curated translatable circRNAs are added into riboCIRC.

  • 8th Apr 2020

    circRNA-encoded peptides are annotated by the automatic analysis pipeline.

  • 1th Feb 2020

    RNA-seq and Ribo-seq data are collected and processed by a unified pipeline.


Citation

  • To cite the use of riboCIRC in your work, please reference the following publication:
  • riboCIRC: a comprehensive database of computationally predicted and experimentally verified translatable circRNAs.

  • To cite our files available for download, please use the following format:
  • "Name of file", riboCIRC, version#, http://ribocirc.com/download/(date of access).

Contacts